Changed the output of the profiler to use style attribute rather then clear, and added the id "codeigniter_profiler" to the container div
diff --git a/system/libraries/Profiler.php b/system/libraries/Profiler.php
index da1fff1..74461e6 100644
--- a/system/libraries/Profiler.php
+++ b/system/libraries/Profiler.php
@@ -322,8 +322,8 @@
 	 */	

 	function run()

 	{		

-		$output = '<br clear="all" />';

-		$output .= "<div style='background-color:#fff;padding:10px;'>";

+		$output = '<br style="clear: both;" />';

+		$output .= "<div id='codeigniter_profiler' style='background-color:#fff;padding:10px;'>";

 		

 		$output .= $this->_compile_memory_usage();

 		$output .= $this->_compile_benchmarks();